• Gomes, F.A.M. & Senne, T.A. – An algorithm for the topology optimization of geometrically nonlinear structures. International Journal for Numerical Methods in Engineering, 99(6):391-409, 2014.
• Andrade, C.Y.; Gomes, F.A.M.; Knobel, M.; Silva, Pedrosa, R.H.L.; Pereira, E.M.A.; A.M.A.C.; Velloso, L.A. – ProFIS: a new paradigm for higher education in Brazil. Journal of Widening Participation and Lifelong Learning, 15(3):22-46, 2013.
• Gomes, F.A.M. & Senne, T.A. – An SLP algorithm and its application to topology optimization. Computational and Applied Mathematics, 30(1):53-89, 2011.
• Friedlander, A. & Gomes, F.A.M. – Solution of a truss topology bilevel programming problem by means of an inexact restoration method. Computational and Applied Mathematics, 30(1):109-125, 2011.
• Bielschowsky, R.H. & Gomes, F.A.M. – Dynamic control of infeasibility in equality constrained optimization. SIAM Journal on Optimization, 19(3):1299-1325, 2008.
• Gomes, F.A.M. – A sequential quadratic programming algorithm that combines merit function and filter ideas. Computational and Applied Mathematics, 26(3):337-379, 2007.
• Dostal. Z.; Friedlander, A.; Gomes, F.A.M.; Santos, S.A. – Preconditioning by projectors in the solution of contact problems: a parallel implementation. Annals of Operations Research, 117:117-129, 2002.
• Amendola, M.; Moura, C.A.; Zago, J.V.; Pulino, P.; Gomes, F.A.M. - Numerical simulation of the cavitation in the hydrodinamic lubrication of journal bearings: a parallel algorithm. Journal of the Brazilian Society of Mechanical Sciences, 23(3):335-45, 2001.
• Dostal, Z.; Gomes, F.A.M.; Santos, S.A – Solution of contact problems by FETI domain decomposition with natural coarse-space projections. Computer Methods in Applied Mechanics and Engineering, 190(13-14):1611-1627, 2000.
• Dostal, Z.; Gomes, F.A.M.; Santos, S.A - Duality-based domain decomposition with natural coarse-space for variational inequalities. Journal of Computational and Applied Mathematics, 126:397-415, 2000.
• Gomes, F.A.M., Maciel, M.C. & Martínez, J.M. – Nonlinear programming algorithms using trust regions and augmented lagrangians with nonmonotone penalty parameters. Mathematical Programming, 84(1):161-200, 1999.
• Bielschowsky, R.H.; Friedlander, A.; Gomes, F.A.M.; Martínez, J.M.; Raydan, M. – An adaptative algorithm for bound constrained quadratic minimization. Investigación Operativa, 7(1):67-102, 1997.
• Gomes, F.A.M. & Martínez, J.M. – Parallel implementation of Broyden's method. Computing, 47(3/4):361-6, 1992.

Artigos em inglês

• Dostal, Z.; Gomes, F.A.M.; Santos, S.A. – Parallel solution of contact problems. Em: Shape optimization and optimal design.  Eds. J. Cagnol, M.P. Polis & J.-P. Zolesio. New York, Marcel Dekker, 2001. pp. 75-90.
• Dostal, Z.; Gomes, F.A.M.; Santos, S.A. – Duality based domain decomposition with adaptative natural coarse grid projectors for contact problems. Em: The mathematics of finite elements and applications. Ed. J. R. Whiteman. Amsterdam, Elsevier, 2000. pp. 259-70.

Capítulos de livros

• Andrade, C.Y.; Gomes, F.A.M.; Knobel, M.; Silva, A.M.A.C. – Programa de Formação Interdisciplinar Superior: um novo caminho para a educação superior. Revista Brasileira de Estudos Pedagógicos, 93:698-719, 2012.
• Dias, C.H. & Gomes, F.A.M. – Otimização de redes de distribuição de água com estações de bombeamento. TEMA – Tendências em Matemática Aplicada e Computacional, 8(3):391-400, 2007.
• Ando Jr, T. & Gomes, F.A.M. – Um algoritmo de restauração inexata para a otimização topológica de treliças. Tendências em Matemática Aplicada e Computacional, 7(2):179-188, 2006.
• Friedlander, A. & Gomes, F.A.M. – O método simplex com decomposição LU aplicado a problemas bloco-angulares. Pesquisa Operacional, 12(1):63-73, 1992.

Artigos em português

• Silva, W.L.; Goncalves, R.R.V.; Siqueira, A.S.; Zullo, J.; Gomes, F.A.M. – Feature extraction for NDVI AVHRR/NOAA time series classification. 6th International Workshop on the Analysis of Multi-temporal Remote Sensing Images (Multi-Temp), 2011.
• Amendola, M.; Moura, C.A.; Zago, J.V.; Pulino, P.; Gomes, F.A.M. – A parallel algorithm for the variational inequality associated to the free boundary problem of the cavitation in hydrodynamic lubrication of journal-bearings. IV World Congress on Computational Mechanics, Buenos Aires, Argentina, 1998. Em: Idelsohn, S.; Oñate, E.; Dvorkin, E. (eds) – Computational mechanics: new trends and applications. Barcelona, CIMNE, 1998.

Artigos completos em anais de congresso

• Gomes, F.A.M.; Santos, S.A.; Thomé, R.C.A. – On the solution to the subproblems of a globally convergent SQP algorithm for nonlinear programming. RP59/03, IMECC, Universidade Estadual de Campinas, Campinas, SP, 2003.
• Gomes, F.A.M. & Sorensen, D. – ARPACK++, a C++ implementation of ARPACK eigenvalue package. CRPC TR 97729, Center for Research on Parallel Computation, Rice University, Houston, Texas, EUA, 1997.

Relatórios técnicos

Brochura

• Gomes, F.A.M. – ProFIS: um relato do primeiro ano do programa de formação geral da UNICAMP. Um  relatório sobre minha experiência como primeiro coordenador do ProFIS. Cuidado: esse arquivo tem 20,4 MB.