Publications
For my publication list sorted by number of citations, please visit my Google Scholar citations page.
Journal titles link to Scimago when available.
International Journals
2. Influence of Stereochemistry in a Local Approach for Calculating Protein Conformations.
Da Rocha, Wagner; Liberti, Leo; Mucherino, Antonio; Malliavin, Therese E. Journal of Chemical Information and Modeling, v. 64, p. 8999-9008, 2024.
1. On the optimality of finding DMDGP symmetries.
Lavor, Carlile; Oliveira, Andres; Da Rocha, Wagner; Souza, Michael. Computational and Applied Mathematics, v. 40, p. 98, 2021.
National Journals
1. Desenvolvimento de Novos Métodos para Investigação do Cérebro durante o Estado de Repouso.
Novi Junior, Sergio Luiz; Da Rocha, Wagner; Carvalho, Alex de Castro; Scavariello, Giovanni Hering; Forti, Rodrigo Menezes; Guiroga Soto, Andres Fabian; Oliveira, Vinicius Romera; Yasuda, Clarissa Lin; Mesquita, Rickson Coelho. Revista Brasileira de Fisica Medica (Online), v. 11, p. 33-37, 2018.
Book Chapters
1. Pseudo-dihedral Angles in Proteins Providing a New Description of the Ramachandran Map.
Da Rocha, Wagner; Lavor, Carlile; Liberti, Leo; Malliavin, Therese E. In: Nielsen, F.; Barbaresco, F. (eds), Geometric Science of Information. GSI 2023. Lecture Notes in Computer Science, vol. 14072. Springer, Cham, p. 511-519, 2023.
Extended Abstracts in Conference Proceedings
1. Impact of Local Geometry on Methods for Constructing Protein Conformations.
Da Rocha, Wagner; Malliavin, Therese; Mucherino, Antonio; Liberti, Leo. In: 19th Conference on Computer Science and Intelligence Systems (FedCSIS), 2024, Belgrade, 2024. p. 677.
Abstracts in Conference Proceedings
1. Caracterização da Estrutura 3D de Proteínas Utilizando Dados de RMN.
Da Rocha, Wagner; Lavor, Carlile. In: XL Congresso Nacional de Matematica Aplicada e Computacional, 2021, virtual event. Series of the Brazilian Society of Computational and Applied Mathematics, 2021. v. 8. p. 010066-1-010066-2.
Manuscripts Under Review
Both manuscripts below were submitted to the Journal of Global Optimization (JOGO). The second one was submitted to the special issue Special Issue on Global Optimization: STOGO, devoted to the Stockholm Global Optimization Workshop XVI.
2. A Hybrid Combinatorial-Continuous Strategy for Solving Molecular Distance Geometry Problems.
Secchin, L. D.; Da Rocha, Wagner; Da Rosa, M.; Liberti, Leo; Lavor, Carlile. Manuscript submitted to the Journal of Global Optimization (JOGO), 2025.
1. An Angular Branch-and-Prune Algorithm for the Interval Discretizable Distance Geometry Problem.
Da Rocha, Wagner; Lavor, C.; Liberti, Leo; De Melo Costa, L.; Secchin, L. D.; Malliavin, Therese. Manuscript submitted to the Journal of Global Optimization (JOGO), 2025. Submitted to the special issue Special Issue on Global Optimization: STOGO.
Theses and Monographs
3. Ordenação em vértices de grafos de proteínas.
Ph.D. thesis, University of Campinas, 2022.
2. Aspectos de Redes Complexas com Aplicações em Neurociência.
Master’s dissertation, University of Campinas, 2017.
1. Estudo da Dinâmica do Câncer Levando em Conta um Fator de Tratamento.
Bachelor’s monograph, University of Campinas, 2014.