| Click on the [?] for help on each option. |
| Type of alignment:
[?]
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Sequential alignment
Score to be maximized:
TM-Score
Structal
Triangular score*
[?]
Penalization for gaps:
Default
Custom:
[?]
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Non-sequential alignment (it is reasonable to uncheck
the "Write sequence" option)
In this case, the non-bijective triangular* score will be maximized.
[?]
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| *Distance cutoff for triangular scores:Å |
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| Options: |
Write sequence alignment (meaningful for one-atom-per-residue selections only)
[?]
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Use squential internal distance initial point
[?]
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| Structures (PDB format): (1 will be aligned to 2) |
| Structure 1: |
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| Selection: |
[?]
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| Structure 2: | |
| Selection: |
[?]
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| Note: | |
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The output contains all atoms of the original pdb file rotated and
translated according to the best alignment obtained for the chain or
molecule considedarkblue.
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