Output Sequence Alignment

The sequence alignment obtained from the structural alignment will be output if this option is checked. It will look something like:

144	GSHMEEMIRSLQQRPEPT---WDLIHIAT	193
202	EE--LQ--KSIGHKPEPTDEEWELIKTVT	247

Keep the option checked if the sequence alignment is of your interest, but disable it for non-sequential alignments or alignments for which atom selections contain more than one atom per residue. In these cases, although something will be output as a sequence correspondence, it will most likely not make any sense. The option is still available for cases where the user may know exactly what they are expecting.